Pubs
Journals
EMIL Technotes
| 51. | S. Magierowski, “SeqSoC: An All-In-One DNA Sequencing Chip,” EMIL Tech. Rep., pp. 1–10, June 30, 2022. |
| 50. | S. Magierowski, “Flappie Neural Network Basecaller,” EMIL Tech. Rep., pp. 1–18, June 26, 2021. |
| 49. | S. Magierowski, “Front-End Nanopore Signal Chain Design (v.4),” EMIL Tech. Rep., pp. 1–23, May 15, 2021. |
| 48. | Y. Dawji and S. Magierowski, “Interfacing EMIL DROIC Hardware to NNI Hardware: An Introduction,” EMIL Tech. Rep., pp. 1–3, March 20, 2021. |
| 47. | S. Magierowski, “DROIC1 Details,” EMIL Tech. Rep., pp. 1-5, March 20, 2021. |
| 46. | S. Magierowski, “Writing DNA,” EMIL Tech. Rep., pp. 1-5, Apr. 9, 2020. |
| 45. | K. Hammad, M. Abbaszadegan, Z. Wu, S. Naushad, D. Ogunremi, S. Magierowski, “Final Report: Bioinformatics and Hardware for 3rd Generation DNA Sequencers in the Services of Field-Based Microbial Threat Detection,” EMIL Tech. Rep., pp. 1–23, Mar. 30, 2020. |
| 44. | S. Magierowski and E. Ghafar-Zadeh, “End-to-End DNA Storage: A Short-Term Proposal,” EMIL Tech. Rep., pp. 1–8, Nov. 8, 2019. |
| 43. | S. Magierowski, “End-to-End DNA Storage Device,” EMIL Tech. Rep., pp. 1–4, July 29, 2019. |
| 42. | S. Magierowski, K. Hammad, Z. Wu, M. Abbaszadegan, “Bioinformatics and Hardware for 3rd Generation DNA Sequencers in the Services of Field-Based Microbial Threat Detection,” EMIL Tech. Rep., pp. 1–8, Apr. 1, 2019. |
| 41. | S. Magierowski, “A 64-State HMM Basecaller Architecture,” EMIL Tech. Rep., pp. 1–7, Feb. 28, 2019. |
| 40. | S. Magierowski, “Scrappie Neural Network Basecaller,” EMIL Tech. Rep., pp. 1–18, Feb. 8, 2019. |
| 39. | S. Magierowski, “Mixed-Signal ICs for High-Speed DNA-Processing,” EMIL Tech. Rep., pp. 1–2, Nov. 23, 2018. |
| 38. | S. Magierowski, “Front-End Nanopore Signal Chain Design (v.3),” EMIL Tech. Rep., pp. 1–11, Sep. 29, 2018. |
| 37. | S. Magierowski, “ONT Nanopore Signal Analysis (v.2),” EMIL Tech. Rep., pp. 1–5, Sep. 28, 2018. |
| 36. | S. Magierowski, “DNA Storage Based on Illumina Technology,” EMIL Tech. Rep., pp. 1–8, Sep. 12, 2018. |
| 35. | S. Magierowski, “DNA Storage,” EMIL Tech. Rep., pp. 1–10, Aug. 31, 2018. |
| 34. | S. Magierowski, “Software/Hardware Components for a Rapid Genome-Based Bacterial Detection System,” EMIL Tech. Rep., pp. 1–8, July 10, 2018. |
| 33. | S. Magierowski, “FPGA Acceleration via PCIe,” EMIL Tech. Rep., pp. 1–7, Mar. 15, 2018. |
| 32. | S. Magierowski, “Blockchain Overview,” EMIL Tech. Rep., pp. 1–8, Feb. 1, 2018. |
| 31. | S. Magierowski, “Machine Learning in DNA Sequencing,” EMIL Tech. Rep., pp. 1–23, Dec. 31, 2017. |
| 30. | S. Magierowski, “HMM Nanopore Basecalling Trellis Arrangements,” EMIL Tech. Rep., pp. 1–6, Dec. 15, 2017. |
| 29. | S. Magierowski, “MinION Sequencing,” EMIL Tech. Rep., pp. 1–8, Nov. 26, 2017. |
| 28. | S. Magierowski, F. Abbasian, and Z. Wu, “The MinION: Structure, Operation, Potential for Genomic Water Quality Assessment,” EMIL Tech. Rep., pp. 1–10, Oct. 26, 2017. |
| 27. | S. Magierowski, “An Automated DNA Sample Loader for Real-Time Genomic Analysis,” EMIL Tech. Rep., pp. 1–5, July 24, 2017. |
| 26. | S. Magierowski, “2D-Basecalling Algorithm: Basics,” EMIL Tech. Rep., pp. 1–5, June 15, 2017. |
| 25. | S. Magierowski, “Nanopore ASIC Readout Part III: Embedded Systems,” EMIL Tech. Rep., pp. 1–6, Feb. 1, 2017. |
| 24. | S. Magierowski, “Nanopore ASIC Readout Part II: Array Design, Control and Programming,” EMIL Tech. Rep., pp. 1–6, Jan. 31, 2017. |
| 23. | S. Magierowski, “Nanopore Basecaller Analysis: Computations, Comparisons, Costs,” EMIL Tech. Rep., pp. 1–4, Dec. 02, 2016. |
| 22. | S. Magierowski, “Nanopore ASIC Readout Part I: Overview, System Design, Pre-Amp Specifications,” EMIL Tech. Rep., pp. 1–13, Nov. 30, 2016. |
| 21. | B. Mittmann and S. Magierowski, “BCall — C Language Basecalling for Nanopore Systems,” EMIL Tech. Rep., pp. 1–5, Oct. 23, 2016. |
| 20. | S. Magierowski, “ONT Nanopore Signal Analysis,” EMIL Tech. Rep., pp. 1–5, Oct. 8, 2016. |
| 19. | S. Magierowski, “Everybody’s Basecalling What’s What,” EMIL Tech. Rep., pp. 1–5, Sept. 26, 2016. |
| 18. | S. Magierowski, “Biological Nanopore Circuit Model,” EMIL Tech. Rep., pp. 1–4, Sept. 19, 2016. |
| 17. | S. Magierowski, “Abstract Models of Pore Behaviour,” EMIL Tech. Rep., pp. 1–6, Aug. 28, 2016. |
| 16. | S. Magierowski, “2D-Basecalling on Nanopore Measurements,” EMIL Tech. Rep., pp. 1–9, Aug. 5, 2016. |
| 15. | S. Magierowski, “HMM-Based Basecalling for Nanopore Systems,” EMIL Tech. Rep., pp. 1–12, July 26, 2016. |
| 14. | S. Magierowski, “MinION Notes,” EMIL Tech. Rep., pp. 1–4, July 6, 2016. |
| 13. | S. Magierowski, “Nanocall Notes,” EMIL Tech. Rep., pp. 1–24, June 30, 2016. |
| 12. | S. Magierowski, “Nanopore Size and Amplitude Numbers (v.4),” EMIL Tech. Rep., pp. 1–6, May 16, 2016. |
| 11. | S. Magierowski, “The Oxford Nanopore Technologies Nanopore Model,” EMIL Tech. Rep., pp. 1–4, Sept. 24, 2015. |
| 10. | S. Magierowski, “Simulation: Digital Receivers and Filtering,” EMIL Tech. Rep., pp. 1–3, Sept. 10, 2015. |
| 9. | S. Magierowski, “The Reshaper Detector in More Detail,” EMIL Tech. Rep., pp. 1–6, July 4, 2015. |
| 8. | S. Magierowski, “Front-End Nanopore Signal Chain Design,” EMIL Tech. Rep., pp. 1–9, June 20, 2015. |
| 7. | S. Magierowski, “Nanopore Size and Amplitude Numbers (v.3),” EMIL Tech. Rep., pp. 1–5, June 18, 2015. |
| 6. | S. Magierowski, “Ion Torrent in a Little Detail,” EMIL Tech. Rep., pp. 1–4, July 6, 2014. |
| 5. | S. Magierowski, “Some Notes on Sequencing,” EMIL Tech. Rep., pp. 1–2, June 12, 2014. |
| 4. | S. Magierowski, “Nanopore Signals for System Simulations,” EMIL Tech. Rep., pp. 1–2, May 29, 2014. |
| 3. | S. Magierowski, “Nanopore Signal Time Characteristics,” EMIL Tech. Rep., pp. 1–2, May 20, 2014. |
| 2. | S. Magierowski, “Nanopore Size and Amplitude Numbers (v.2),” EMIL Tech. Rep., pp. 1–2, May 17, 2014. |
| 1. | S. Magierowski, “Nanopore Noise Thoughts,” EMIL Tech. Rep., pp. 1–2, May 14, 2014. |
FISHLab Technotes
Sebastian Magierowski
Associate Professor
Department of Electrical Engineering and Computer Science
Lassonde School of Engineering
York University